threshold
#!/bin/sh
# Make image containing positive values only by thresholding at 0
fslmaths img -thr 0 img_posthreshold
#!/bin/sh
# Make image containing positive values only by thresholding at 0
fslmaths img -thr 0 img_posthreshold
#!/bin/sh
# Apply multiple ordered operations:
# multiplication followed by thresholding
# and then making the image binary
fslmaths img -mul gm_mask -thr 0.5 -bin img_gm_binthreshold
#!/bin/sh
# Make a 5 percent mask (default choice for fdt results).
# fdt is FSL's diffusion toolbox.
# Use following percentage (0-100) of ROBUST RANGE of
# non-zero voxels and threshold below that percentage
# Note that larger values are more stringent
fslmaths img -thrp 5 img_5pCopyright © 2021 Codeinu
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