Answers for "fsl img2stdcoord"

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fsl img2stdcoord

#!/bin/sh

: <<COMMENTBLOCK

Purpose:    convert voxel coordinates to mm coordinates.  Why?  
			Because fslstats -x outputs voxel coordinates and 
            atlasquery expects mm coordinates.  
            See also  std2imgcoord and img2imgcoord to go the other way. 
Input:		1) image name
            2) x in voxel coordinates
            3) y in voxel coordinates
            4) z in voxel coordinates


COMMENTBLOCK
              
img=$1 
voxdimX=$2
voxdimY=$3
voxdimZ=$4

# Use the same img for both -img and -std to omit any trasform to standard space
# This simply translates voxel coordinates to mm coordinates for any image
echo ${voxdimX} ${voxdimY} ${voxdimZ} | img2stdcoord -img ${img} -std ${img}
Posted by: Guest on April-10-2021

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