fsl bet brain extraction
#!/bin/sh
# FSL tool to extract the brain:
bet T1w_cropped T1w_brainfsl bet brain extraction
#!/bin/sh
# FSL tool to extract the brain:
bet T1w_cropped T1w_brainfsl bet brain extraction
#!/bin/sh
# fsl_anat will clean up the T1w image & normalize it to standard space
# including bias correction, tissue segmentation & subcortical
# segmentation (FIRST), though it creates the image in 2mm MNI space.
# Output is generated in a subdirectory named for the image but with the
# extension .anat (e.g., T1w.anat)
# Do all processing
fsl_anat -i T1w
# Do not run reorient, segmentation or FIRST subcortical segmentation
fsl_anat -i T1w --noreorient --noseg --nosubcortsegCopyright © 2021 Codeinu
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