how to calculate aligned base count rna seq
bedtools genomecov -ibam input.bam -bga > output_aln.bam
awk '{s+=$4}END{print s}' output_aln.bamhow to calculate aligned base count rna seq
bedtools genomecov -ibam input.bam -bga > output_aln.bam
awk '{s+=$4}END{print s}' output_aln.bamCopyright © 2021 Codeinu
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